Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
187
ATAC-seq
97
total RNA-seq
75
single cell RNA-seq
41
WGBS
31
DNase-seq
29
snATAC-seq
16
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
279
DNA binding
248
DNA accessibility
172
Transcription
52
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
August, 2017
59
September, 2020
55
June, 2019
47
September, 2018
February, 2021
32
October, 2019
13
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
611
bigWig
606
bam
364
fastq
294
bed narrowPeak
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
777
Homo sapiens
Biosample type
1568
tissue
777
primary cell
525
cell line
259
in vitro differentiated cells
6
stem cell
Organ
290
epithelium
238
pancreas
35
vasculature
30
kidney
29
blood vessel
22
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
389
AMP
279
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
374
hg19
283
GRCh38
Lab
354
AMP-T2D consortium
279
Klaus Kaestner, Upenn
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tsv
month_released!
February, 2021
BIOSAMPLE
ASSAY
777 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
13
35
42
25
1
monocyte
85
15
1
1
1
Langerhans cell
73
21
pancreatic beta cell
13
23
11
16
1
exocrine cell
39
+ See 69 more…
See all biosamples
Download