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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
865
ChIP-seq
248
ATAC-seq
178
DNase-seq
99
total RNA-seq
85
RNA microarray
27
WGBS
16
Hi-C
15
single cell RNA-seq
11
RRBS
8
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
4
pCHi-C
Assay category
865
DNA binding
438
DNA accessibility
114
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
591
histone modification
590
histone
307
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
234
October, 2019
195
August, 2017
163
June, 2019
130
August, 2021
115
May, 2019
93
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
73
February, 2023
66
May, 2022
50
May, 2020
48
December, 2017
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
15
May, 2023
8
March, 2020
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
1
May, 2021
Available data
1905
bam
1730
bigWig
tsv
942
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1556
Homo sapiens
Biosample type
1564
tissue
534
cell line
391
primary cell
263
in vitro differentiated cells
4
stem cell
Organ
242
brain
240
kidney
207
liver
200
pancreas
162
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
1564
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
900
GRCh38
835
hg19
Lab
1346
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
25
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
BIOSAMPLE
ASSAY
1564 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
WGBS
Hi-C
single cell RNA-seq
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
pCHi-C
tissue
liver
145
20
2
20
3
1
1
1
kidney
27
75
13
49
1
12
1
6
1
islet of Langerhans
69
56
1
24
3
1
1
1
4
4
bone element
84
heart left ventricle
35
2
3
4
1
1
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