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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
722
ChIP-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
6
total RNA-seq
4
FAIRE-seq
Assay category
722
DNA binding
245
DNA accessibility
17
DNA methylation
6
Transcription
Target of assay
466
histone modification
465
histone
243
narrow histone mark
222
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
178
October, 2019
163
June, 2019
115
May, 2019
81
August, 2017
79
April, 2019
74
October, 2018
69
November, 2017
50
May, 2020
48
December, 2017
26
November, 2018
24
May, 2022
20
November, 2019
17
July, 2019
15
October, 2017
8
February, 2021
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
1
March, 2019
Available data
1907
bam
1732
bigWig
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
983
Homo sapiens
Biosample type
990
tissue
478
cell line
357
primary cell
164
in vitro differentiated cells
3
stem cell
Organ
217
brain
158
pancreas
136
liver
119
heart
110
limb
96
kidney
83
blood vessel
83
vasculature
44
adipose tissue
44
connective tissue
40
musculature of body
38
nerve
34
artery
24
spleen
18
ureter
8
bone element
8
skeleton
3
eye
1
pituitary gland
Project
988
AMP
2
T1D
Genome assembly (visualization)
786
GRCh38
731
hg19
Lab
965
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
BIOSAMPLE
ASSAY
990 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
total RNA-seq
FAIRE-seq
tissue
liver
122
2
islet of Langerhans
30
1
38
6
1
body of pancreas
35
4
4
2
heart left ventricle
34
3
2
2
kidney
27
13
1
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