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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
712
ChIP-seq
238
ATAC-seq
174
DNase-seq
86
total RNA-seq
85
RNA microarray
70
single cell RNA-seq
28
snATAC-seq
23
WGBS
15
Hi-C
10
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
712
DNA binding
444
DNA accessibility
156
Transcription
33
DNA methylation
15
3D chromatin structure
Target of assay
523
histone
523
histone modification
265
narrow histone mark
258
broad histone mark
141
control
50
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
229
October, 2019
163
June, 2019
141
August, 2017
130
August, 2021
115
May, 2019
92
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
47
September, 2023
29
July, 2019
26
May, 2022
23
October, 2017
21
November, 2019
19
April, 2020
19
November, 2018
15
May, 2023
11
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1619
bam
1467
bigWig
tsv
831
bed narrowPeak
512
bigBed narrowPeak
294
fastq
210
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
1445
Homo sapiens
Biosample type
1454
tissue
809
primary cell
248
in vitro differentiated cells
157
cell line
6
stem cell
Organ
287
kidney
242
brain
230
pancreas
liver
162
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1357
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
816
GRCh38
721
hg19
Lab
1183
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
organ_slims!
liver
BIOSAMPLE
ASSAY
1454 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
islet of Langerhans
71
67
1
31
7
3
1
4
1
4
bone element
84
heart left ventricle
35
2
3
4
1
1
body of pancreas
35
4
4
2
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