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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
21
ATAC-seq
20
total RNA-seq
4
DNase-seq
4
WGBS
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
155
DNA binding
25
DNA accessibility
21
Transcription
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
54
August, 2017
50
May, 2020
48
December, 2017
40
May, 2022
7
November, 2018
5
October, 2019
1
February, 2021
1
July, 2019
1
March, 2020
Available data
288
bam
265
bigWig
tsv
113
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
207
Homo sapiens
Biosample type
386
cell line
207
tissue
15
in vitro differentiated cells
9
primary cell
Organ
287
kidney
242
brain
230
pancreas
207
liver
202
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
207
AMP
Genome assembly (visualization)
116
hg19
86
GRCh38
Lab
167
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
tsv
BIOSAMPLE
ASSAY
207 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
liver
145
20
20
2
3
1
1
1
right lobe of liver
10
1
2
1
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