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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
39
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
113
DNA binding
66
DNA accessibility
9
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
RNA binding protein
Date released
54
April, 2019
36
February, 2023
35
May, 2024
27
June, 2019
19
May, 2019
13
July, 2019
6
October, 2019
2
March, 2020
Available data
163
bed narrowPeak
147
bigWig
127
bam
tsv
83
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
192
Homo sapiens
Biosample type
192
tissue
14
cell line
8
primary cell
Organ
286
kidney
242
brain
222
pancreas
205
liver
192
heart
116
blood vessel
116
vasculature
115
limb
100
bone element
85
connective tissue
84
adipose tissue
75
musculature of body
68
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
192
AMP
Genome assembly (visualization)
168
GRCh38
95
hg19
Lab
157
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
files.file_type!
tsv
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
192 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
32
2
3
4
1
1
coronary artery
4
36
2
left cardiac atrium
35
1
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
right atrium auricular region
9
1
2
right cardiac atrium
6
1
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