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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
59
single cell RNA-seq
49
total RNA-seq
6
snATAC-seq
4
RRBS
2
DNase-seq
2
STARR-seq
1
Hi-C
Assay category
108
Transcription
83
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Date released
130
August, 2021
47
September, 2023
14
May, 2023
4
July, 2019
2
October, 2019
1
December, 2019
Available data
183
bed narrowPeak
bam
131
bigWig
104
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
198
Homo sapiens
Biosample type
191
tissue
5
primary cell
2
cell line
Organ
246
pancreas
198
kidney
197
epithelium
98
liver
93
bone element
87
connective tissue
49
eye
46
adipose tissue
44
heart
41
vasculature
40
blood vessel
36
musculature of body
35
artery
29
brain
19
lung
9
blood
9
bodily fluid
8
skeleton
5
limb
4
gonad
4
ovary
2
vein
1
bone marrow
1
embryo
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
151
AMP
47
KPMP
Genome assembly (visualization)
75
GRCh38
5
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
7
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
bam
BIOSAMPLE
ASSAY
198 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
DNase-seq
STARR-seq
Hi-C
tissue
kidney
75
59
49
6
1
1
primary cell
epithelial cell of proximal tubule
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
renal cortical epithelial cell
1
cell line
HEK293T
2
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