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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
30
DNase-seq
4
ATAC-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
212
DNA binding
35
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
26
control
1
RNA binding protein
1
transcription factor
Date released
85
November, 2017
85
October, 2019
28
June, 2019
28
May, 2019
16
October, 2017
5
July, 2019
2
November, 2018
1
February, 2023
Available data
235
bam
213
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
tsv
15
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
250
Homo sapiens
Biosample type
242
tissue
8
primary cell
Organ
617
liver
529
pancreas
epithelium
330
kidney
260
brain
225
heart
202
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
250
AMP
Genome assembly (visualization)
199
GRCh38
142
hg19
Lab
250
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
tsv
bed bedgraph
organ_slims!
epithelium
BIOSAMPLE
ASSAY
250 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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