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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
188
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
3
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
258
DNA binding
248
DNA accessibility
184
Transcription
52
DNA methylation
10
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
154
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
September, 2020
47
September, 2018
45
August, 2017
41
February, 2021
31
June, 2019
28
October, 2019
13
July, 2019
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
November, 2017
3
October, 2022
1
March, 2020
1
March, 2023
1
November, 2018
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
769
Homo sapiens
Biosample type
1488
tissue
769
primary cell
484
cell line
262
in vitro differentiated cells
6
stem cell
Organ
268
epithelium
238
pancreas
23
vasculature
21
blood vessel
20
kidney
18
connective tissue
18
vein
11
musculature of body
8
blood
8
bodily fluid
7
brain
7
liver
6
heart
4
eye
1
bone element
1
bone marrow
Project
342
AMP
318
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
334
hg19
239
GRCh38
Lab
318
Klaus Kaestner, Upenn
307
AMP-T2D consortium
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
34
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tsv
bed broadPeak
BIOSAMPLE
ASSAY
769 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
35
42
25
1
monocyte
85
15
1
1
1
pancreatic beta cell
13
23
11
16
1
exocrine cell
39
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