Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
13
single cell RNA-seq
4
ATAC-seq
3
ChIP-seq
2
pCHi-C
Assay category
31
DNA accessibility
13
Transcription
3
DNA binding
Target of assay
3
control
Date released
180
August, 2017
162
May, 2022
133
February, 2021
125
May, 2020
124
February, 2023
109
October, 2019
93
May, 2021
93
November, 2017
90
August, 2021
59
September, 2020
47
September, 2023
36
July, 2019
29
October, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
16
March, 2020
15
April, 2019
15
May, 2023
15
November, 2018
11
October, 2017
10
November, 2020
8
February, 2018
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
November, 2019
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
1
September, 2018
Available data
572
bam
tsv
551
bigWig
89
txt
45
fastq
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
133
Homo sapiens
Biosample type
85
tissue
40
primary cell
4
cell line
4
in vitro differentiated cells
Organ
84
bone element
5
connective tissue
2
artery
2
blood vessel
2
heart
2
liver
2
vasculature
Project
94
AMP
39
HPAP
Genome assembly (visualization)
6
hg19
Lab
94
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
files.file_type!
tsv
bed narrowPeak
BIOSAMPLE
ASSAY
133 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
bone element
84
liver
1
primary cell
Langerhans cell
27
12
osteoblast
1
cell line
smooth muscle cell of the coronary artery
2
HepG2
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
4
Download