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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
81
ATAC-seq
41
WGBS
35
single cell RNA-seq
22
snATAC-seq
20
total RNA-seq
8
ChIP-seq
2
pCHi-C
Assay category
103
DNA accessibility
55
Transcription
41
DNA methylation
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
298
October, 2019
226
May, 2021
218
June, 2019
196
August, 2021
176
May, 2022
152
May, 2020
124
August, 2017
120
May, 2019
117
February, 2021
113
February, 2023
82
November, 2017
80
April, 2019
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
19
April, 2020
19
March, 2020
18
September, 2020
16
January, 2021
16
October, 2018
15
May, 2023
12
November, 2020
6
October, 2017
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
1
December, 2019
Available data
596
bam
571
bigWig
tsv
134
zippedFastqFolder
96
txt
fastq
61
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
3
bed bed3+
2
bed bed3
Organism
293
Homo sapiens
Biosample type
136
primary cell
135
tissue
18
cell line
4
in vitro differentiated cells
Organ
92
bone element
80
epithelium
80
pancreas
43
liver
14
artery
14
blood vessel
14
heart
14
vasculature
8
skeleton
6
connective tissue
6
limb
2
musculature of body
Project
159
AMP
134
HPAP
Genome assembly (visualization)
50
hg19
23
GRCh38
Lab
134
Klaus Kaestner, Upenn
119
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
84
inconsistent ontology term
1
audit script error
1
inconsistent replicate
files.file_type!
tsv
fastq
BIOSAMPLE
ASSAY
293 results
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RNA microarray
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
osteoblast
1
1
tissue
bone element
84
liver
20
1
20
skeletal muscle tissue
1
1
distal epiphysis
1
distal epiphysis of femur
1
+ See 6 more…
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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