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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
89
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
93
DNA accessibility
90
Transcription
Date released
406
November, 2017
322
August, 2017
297
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
41
November, 2019
39
July, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
76
fastq
65
bed narrowPeak
tsv
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
3
bigWig
Organism
188
Homo sapiens
Biosample type
91
tissue
76
primary cell
16
in vitro differentiated cells
6
cell line
Organ
56
pancreas
50
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
27
eye
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
90
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
45
hg19
35
GRCh38
Lab
87
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
files.file_type!
tsv
hdf5
BIOSAMPLE
ASSAY
189 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
11
5
2
retina
15
pigmented layer of retina
12
acetabular part of hip bone
1
1
+ See 6 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
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