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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
22
ATAC-seq
13
single cell RNA-seq
2
pCHi-C
Assay category
49
DNA accessibility
13
Transcription
Date released
328
November, 2017
249
October, 2019
237
August, 2017
218
June, 2019
200
May, 2022
189
February, 2023
172
August, 2021
148
February, 2021
136
May, 2021
120
May, 2019
102
May, 2020
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
572
bam
tsv
551
bigWig
89
txt
45
fastq
23
bed narrowPeak
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
148
Homo sapiens
Biosample type
93
tissue
41
primary cell
10
cell line
4
in vitro differentiated cells
Organ
92
bone element
8
artery
8
blood vessel
8
heart
8
skeleton
8
vasculature
6
connective tissue
6
limb
3
liver
Project
109
AMP
39
HPAP
Genome assembly (visualization)
24
hg19
18
GRCh38
Lab
109
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
files.file_type!
tsv
tagAlign
BIOSAMPLE
ASSAY
148 results
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Clear Filters
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 5 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
1
in vitro differentiated cells
adipocyte
4
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