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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
32
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
100
DNA binding
37
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
88
histone
88
histone modification
63
narrow histone mark
25
broad histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
47
October, 2019
30
June, 2019
28
May, 2019
25
November, 2017
7
July, 2019
2
November, 2018
2
October, 2017
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
142
Homo sapiens
Biosample type
124
tissue
18
primary cell
Organ
531
liver
510
pancreas
361
epithelium
330
kidney
184
connective tissue
179
heart
162
vasculature
156
blood vessel
142
brain
115
limb
101
bone element
82
adipose tissue
77
artery
72
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
142
AMP
Genome assembly (visualization)
123
GRCh38
109
hg19
Lab
142
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
tsv
tagAlign
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
6
14
1
1
temporal lobe
15
angular gyrus
13
layer of hippocampus
8
middle frontal area 46
6
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primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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