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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
478
ATAC-seq
212
DNase-seq
212
total RNA-seq
106
single cell RNA-seq
85
RNA microarray
63
snATAC-seq
34
Hi-C
28
WGBS
26
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
DNA methylation
Date released
12
July, 2019
9
August, 2017
7
November, 2018
2
February, 2023
Available data
zippedFastqFolder
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
tsv
Organism
30
Homo sapiens
Biosample type
27
tissue
3
cell line
Organ
8
heart
6
adipose tissue
6
connective tissue
5
liver
4
pancreas
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
28
AMP
2
T1D
Genome assembly (visualization)
17
GRCh38
Lab
28
AMP-T2D consortium
2
Kyle Gaulton, UCSD
files.file_type!
tsv
zippedFastqFolder
BIOSAMPLE
ASSAY
30 results
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WGBS
HiChIP
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 8 more…
cell line
EndoC_BH1
2
HepG2
1
See all biosamples
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