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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
89
single cell RNA-seq
88
ChIP-seq
55
snATAC-seq
21
ATAC-seq
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
192
Transcription
88
DNA binding
76
DNA accessibility
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
102
May, 2021
99
February, 2023
47
September, 2023
40
September, 2020
39
February, 2021
19
April, 2020
16
January, 2021
7
August, 2020
5
March, 2020
5
March, 2023
3
October, 2022
Available data
196
bigWig
186
bam
169
fastq
zippedFastqFolder
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
377
Homo sapiens
Biosample type
274
primary cell
97
tissue
9
cell line
2
stem cell
Organ
98
pancreas
68
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
165
HPAP
146
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
99
GRCh38
91
hg19
Lab
165
Klaus Kaestner, Upenn
140
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
6
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
3
inconsistent ontology term
files.file_type!
tsv
zippedFastqFolder
award.project!
AMP
BIOSAMPLE
ASSAY
382 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
84
1
Langerhans cell
33
27
pancreatic alpha cell
42
7
1
exocrine cell
39
pancreatic beta cell
11
3
1
+ See 17 more…
tissue
kidney
47
islet of Langerhans
7
2
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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