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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1473
ChIP-seq
478
ATAC-seq
212
DNase-seq
212
total RNA-seq
106
single cell RNA-seq
85
RNA microarray
63
snATAC-seq
34
Hi-C
28
WGBS
26
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
106
Transcription
Date released
47
September, 2023
21
September, 2020
13
February, 2021
9
April, 2020
8
August, 2021
3
May, 2023
1
December, 2019
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
tsv
128
fastq
100
bam
100
bigWig
zippedFastqFolder
13
txt
8
csv
Organism
106
Homo sapiens
Biosample type
71
tissue
35
primary cell
Organ
59
kidney
9
lung
1
heart
1
liver
1
musculature of body
Project
47
KPMP
33
HPAP
17
AMP
9
LungMap
Lab
47
KPMP
33
Klaus Kaestner, Upenn
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
6
AMP-T2D consortium
files.file_type!
tsv
zippedFastqFolder
tagAlign
BIOSAMPLE
ASSAY
106 results
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Clear Filters
single cell RNA-seq
tissue
kidney
59
lung
9
heart
1
liver
1
skeletal muscle tissue
1
primary cell
Langerhans cell
33
pancreatic cell
2
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