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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
49
total RNA-seq
19
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
57
Transcription
19
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
328
November, 2017
249
October, 2019
237
August, 2017
218
June, 2019
189
February, 2023
172
August, 2021
148
February, 2021
136
May, 2021
120
May, 2019
102
May, 2020
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
66
May, 2022
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
40
September, 2020
35
December, 2018
25
January, 2019
24
February, 2018
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
106
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
171
Homo sapiens
Biosample type
130
tissue
27
cell line
15
in vitro differentiated cells
Organ
130
kidney
22
liver
5
connective tissue
3
pancreas
2
epithelium
1
adipose tissue
Project
172
AMP
Genome assembly (visualization)
74
GRCh38
30
hg19
Lab
128
Katalin Susztak, Upenn
26
Bing Ren, UCSD
14
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
tsv
zippedFastqFolder
tagAlign
BIOSAMPLE
ASSAY
172 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
1
adipocyte
1
1
osteoblast
1
1
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