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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
65
DNA binding
8
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
25
histone
25
histone modification
23
control
17
transcription factor
16
broad histone mark
9
narrow histone mark
5
RNA binding protein
Date released
49
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
81
Homo sapiens
Biosample type
81
tissue
1
in vitro differentiated cells
Organ
531
liver
430
pancreas
330
kidney
281
epithelium
219
heart
184
connective tissue
162
vasculature
156
blood vessel
142
brain
115
limb
101
bone element
82
adipose tissue
77
artery
72
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
82
AMP
Genome assembly (visualization)
27
hg19
26
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tsv
zippedFastqFolder
tagAlign
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
28
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
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in vitro differentiated cells
white fat cell
1
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