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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
32
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
196
DNA binding
35
DNA accessibility
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
27
control
3
RNA binding protein
3
transcription factor
Date released
82
October, 2019
78
November, 2017
30
June, 2019
28
May, 2019
9
October, 2017
2
July, 2019
2
November, 2018
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
231
Homo sapiens
Biosample type
217
tissue
14
primary cell
Organ
519
liver
283
pancreas
231
brain
171
epithelium
141
heart
132
kidney
127
vasculature
122
blood vessel
119
connective tissue
110
limb
60
blood
60
bodily fluid
51
musculature of body
48
artery
44
adipose tissue
38
nerve
24
spleen
22
embryo
20
vein
18
ureter
8
bone element
8
skeleton
7
eye
1
pituitary gland
Project
231
AMP
Genome assembly (visualization)
203
GRCh38
143
hg19
Lab
231
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
231 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
brain
13
14
layer of hippocampus
20
angular gyrus
15
caudate nucleus
14
1
temporal lobe
15
+ See 69 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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