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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1677
ChIP-seq
483
ATAC-seq
212
DNase-seq
193
total RNA-seq
158
single cell RNA-seq
85
RNA microarray
69
WGBS
66
snATAC-seq
34
Hi-C
21
RRBS
10
MeRIP-seq
9
pCHi-C
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
4
October, 2019
2
February, 2021
2
March, 2020
1
August, 2018
Available data
tsv
3
bedpe bed3+
2
bed bed3+
2
ibed
1
bam
1
fastq
Organism
9
Homo sapiens
Biosample type
4
tissue
3
in vitro differentiated cells
1
cell line
1
primary cell
Organ
4
eye
2
connective tissue
1
adipose tissue
1
liver
Project
9
AMP
Genome assembly (visualization)
4
hg19
Lab
Kyle Gaulton, UCSD
9
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
tsv
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
9 results
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Clear Filters
pCHi-C
tissue
islet of Langerhans
4
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
white fat cell
1
cell line
HepG2
1
primary cell
osteoblast
1
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