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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
441
ATAC-seq
212
DNase-seq
163
total RNA-seq
147
single cell RNA-seq
85
RNA microarray
78
snATAC-seq
69
WGBS
33
Hi-C
26
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
147
Transcription
Date released
47
September, 2023
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
tsv
128
fastq
100
bam
100
bigWig
52
zippedFastqFolder
8
csv
5
txt
Organism
147
Homo sapiens
Biosample type
87
primary cell
60
tissue
Organ
48
kidney
9
lung
1
heart
1
liver
1
musculature of body
Project
85
HPAP
47
KPMP
9
LungMap
6
AMP
Lab
85
Klaus Kaestner, Upenn
47
KPMP
Katalin Susztak, Upenn
9
Xin Sun, UCSD
6
AMP-T2D consortium
files.file_type!
tsv
lab.title!
Stephen Parker, UMich
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
147 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic cell
2
tissue
kidney
48
lung
9
heart
1
liver
1
skeletal muscle tissue
1
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