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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
185
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
29
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
271
DNA accessibility
226
DNA binding
184
Transcription
51
DNA methylation
10
3D chromatin structure
Target of assay
199
histone
199
histone modification
106
broad histone mark
93
narrow histone mark
19
control
8
RNA binding protein
8
transcription factor
Date released
154
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
August, 2017
59
September, 2020
55
June, 2019
47
September, 2018
41
February, 2021
32
October, 2019
13
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
567
bigWig
551
bam
351
fastq
tsv
262
bed narrowPeak
153
zippedFastqFolder
90
bigBed narrowPeak
88
tagAlign
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
759
Homo sapiens
Biosample type
1466
tissue
759
primary cell
543
cell line
195
in vitro differentiated cells
6
stem cell
Organ
261
epithelium
197
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
332
AMP
318
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
329
hg19
242
GRCh38
Lab
318
Klaus Kaestner, Upenn
297
AMP-T2D consortium
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
files.file_type!
tsv
month_released!
August, 2017
BIOSAMPLE
ASSAY
759 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
1
pancreatic alpha cell
34
42
25
1
pancreatic beta cell
22
11
16
1
exocrine cell
39
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