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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
73
single cell RNA-seq
50
ATAC-seq
41
WGBS
21
snATAC-seq
18
ChIP-seq
6
Hi-C
5
STARR-seq
1
whole genome sequencing assay
Assay category
165
Transcription
71
DNA accessibility
41
DNA methylation
18
DNA binding
6
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
134
May, 2022
76
February, 2023
59
September, 2020
February, 2021
26
August, 2021
7
August, 2020
3
October, 2022
2
March, 2019
Available data
153
zippedFastqFolder
124
fastq
24
bigWig
14
bed narrowPeak
tsv
5
bedpe bed3+
5
hic
3
cool
1
bedpe
1
vcf
Organism
307
Homo sapiens
Biosample type
279
primary cell
25
cell line
3
tissue
Organ
149
pancreas
146
epithelium
22
liver
2
kidney
Project
279
HPAP
28
AMP
Genome assembly (visualization)
20
hg19
11
GRCh38
Lab
2307
AMP-T2D consortium
279
Klaus Kaestner, Upenn
247
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
audit script error
1
inconsistent ontology term
files.file_type!
tsv
month_released!
February, 2021
BIOSAMPLE
ASSAY
307 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
ChIP-seq
Hi-C
STARR-seq
whole genome sequencing assay
primary cell
pancreatic alpha cell
42
29
25
1
Langerhans cell
73
21
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
cell line
HepG2
18
1
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
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