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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
245
ATAC-seq
178
DNase-seq
106
total RNA-seq
70
single cell RNA-seq
28
snATAC-seq
15
WGBS
12
Hi-C
5
RRBS
5
pCHi-C
4
MeRIP-seq
2
FAIRE-seq
1
RNA microarray
Assay category
907
DNA binding
453
DNA accessibility
176
Transcription
20
DNA methylation
12
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
234
October, 2019
195
August, 2017
163
June, 2019
130
August, 2021
115
May, 2019
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
15
May, 2023
12
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1391
bam
1265
bigWig
969
bed narrowPeak
tsv
559
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1569
Homo sapiens
Biosample type
1578
tissue
764
primary cell
525
cell line
259
in vitro differentiated cells
6
stem cell
Organ
285
kidney
239
brain
228
pancreas
205
liver
189
heart
115
blood vessel
115
vasculature
104
limb
90
connective tissue
89
adipose tissue
70
musculature of body
68
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
12
epithelium
8
bone element
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
1
thymus
Project
1481
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
920
GRCh38
816
hg19
Lab
1227
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
month_released!
February, 2021
July, 2019
BIOSAMPLE
ASSAY
1578 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
MeRIP-seq
FAIRE-seq
RNA microarray
tissue
kidney
27
75
13
49
59
6
1
liver
145
20
2
20
3
1
1
islet of Langerhans
71
67
1
31
7
3
4
4
1
body of pancreas
35
4
4
2
coronary artery
5
35
2
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