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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
33
DNase-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
40
DNA binding
35
DNA accessibility
6
3D chromatin structure
6
DNA methylation
1
Transcription
Target of assay
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
2
March, 2020
2
May, 2022
1
January, 2018
1
October, 2019
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
88
Homo sapiens
Biosample type
76
tissue
12
primary cell
Organ
614
liver
529
pancreas
368
epithelium
330
kidney
260
brain
211
heart
200
connective tissue
154
vasculature
148
blood vessel
109
limb
90
adipose tissue
87
musculature of body
69
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
9
bone element
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
88
AMP
Genome assembly (visualization)
67
hg19
47
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
tsv
month_released!
February, 2021
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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