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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
187
ATAC-seq
97
total RNA-seq
75
single cell RNA-seq
41
WGBS
29
snATAC-seq
16
pCHi-C
10
Hi-C
10
RRBS
7
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
248
DNA binding
224
DNA accessibility
172
Transcription
52
DNA methylation
10
3D chromatin structure
Target of assay
218
histone
218
histone modification
114
broad histone mark
104
narrow histone mark
24
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
August, 2017
59
September, 2020
June, 2019
47
September, 2018
February, 2021
32
October, 2019
13
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
564
bigWig
551
bam
364
fastq
tsv
247
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
12
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
722
Homo sapiens
Biosample type
1445
tissue
722
primary cell
525
cell line
259
in vitro differentiated cells
6
stem cell
Organ
270
epithelium
238
pancreas
31
vasculature
27
blood vessel
22
vein
17
kidney
13
brain
8
blood
8
bodily fluid
7
liver
5
connective tissue
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
334
AMP
279
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
334
hg19
236
GRCh38
Lab
299
AMP-T2D consortium
279
Klaus Kaestner, Upenn
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
12
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tsv
month_released!
June, 2019
February, 2021
BIOSAMPLE
ASSAY
722 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
13
35
42
25
1
monocyte
85
15
1
1
1
Langerhans cell
73
21
pancreatic beta cell
13
23
11
16
1
exocrine cell
39
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