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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
501
ATAC-seq
212
DNase-seq
208
total RNA-seq
158
single cell RNA-seq
84
snATAC-seq
69
WGBS
33
Hi-C
25
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
208
Transcription
Date released
85
February, 2023
49
August, 2021
26
May, 2022
16
September, 2020
14
October, 2019
9
May, 2021
4
July, 2018
2
March, 2020
2
May, 2020
1
May, 2023
Available data
tsv
1224
bam
1220
bigWig
237
fastq
55
txt
2
bed bed3+
Organism
208
Homo sapiens
Biosample type
102
tissue
97
primary cell
9
in vitro differentiated cells
Organ
71
pancreas
53
epithelium
49
kidney
20
liver
14
eye
5
connective tissue
bone element
4
skeleton
1
adipose tissue
Project
109
AMP
92
HPAP
7
T1D
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
28
AMP-T2D consortium
20
Karen Mohlke, UNC
19
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
tsv
month_released!
March, 2019
organ_slims!
bone element
BIOSAMPLE
ASSAY
208 results
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Clear Filters
total RNA-seq
tissue
kidney
49
islet of Langerhans
31
liver
20
adipose tissue
1
pancreas
1
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
2
monocyte
1
+ See 2 more…
in vitro differentiated cells
embryonic stem cell
5
immature adipocyte
2
adipocyte
1
preadipocyte
1
See all biosamples
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