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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ATAC-seq
49
total RNA-seq
13
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
80
DNA accessibility
57
Transcription
13
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
186
February, 2023
180
May, 2022
164
August, 2021
150
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
80
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
30
November, 2019
29
October, 2018
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
14
March, 2020
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
1
September, 2018
Available data
tsv
106
bed narrowPeak
64
xls
57
txt
49
bam
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
163
Homo sapiens
Biosample type
130
tissue
20
in vitro differentiated cells
13
cell line
1
primary cell
Organ
130
kidney
9
liver
3
connective tissue
3
epithelium
3
pancreas
1
adipose tissue
Project
164
AMP
Genome assembly (visualization)
74
GRCh38
14
hg19
Lab
128
Katalin Susztak, Upenn
22
AMP-T2D consortium
12
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
tsv
bigWig
BIOSAMPLE
ASSAY
164 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
8
adipocyte
1
osteoblast
1
cell line
HepG2
4
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
1
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