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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
190
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
92
histone
92
histone modification
69
transcription factor
58
broad histone mark
34
narrow histone mark
29
control
26
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
207
bam
177
bigWig
170
bed narrowPeak
170
bigBed narrowPeak
88
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
208
Homo sapiens
Biosample type
141
tissue
61
cell line
6
primary cell
Organ
53
liver
50
blood vessel
50
vasculature
30
brain
21
heart
15
blood
15
bodily fluid
9
pancreas
9
spleen
7
limb
7
musculature of body
5
artery
5
epithelium
5
kidney
1
adipose tissue
1
connective tissue
Project
208
AMP
Genome assembly (visualization)
175
GRCh38
168
hg19
Lab
208
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tsv
BIOSAMPLE
ASSAY
208 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 12 more…
cell line
HepG2
45
1
GM12878
15
primary cell
kidney epithelial cell
5
pancreatic cell
1
See all biosamples
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