Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
406
DNA binding
99
DNA accessibility
60
Transcription
41
DNA methylation
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
416
bam
354
bigWig
351
bed narrowPeak
348
fastq
312
bigBed narrowPeak
134
zippedFastqFolder
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
7
txt
3
tar
1
bed bed3+
Organism
606
Homo sapiens
Biosample type
315
cell line
148
tissue
143
primary cell
Organ
355
liver
104
pancreas
91
brain
86
epithelium
6
vasculature
3
blood vessel
2
musculature of body
Project
472
AMP
134
HPAP
Genome assembly (visualization)
320
hg19
280
GRCh38
Lab
408
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tsv
BIOSAMPLE
ASSAY
606 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
cell line
HepG2
315
tissue
liver
20
20
islet of Langerhans
18
6
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
+ See 4 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
astrocyte of the cerebellum
3
+ See 2 more…
See all biosamples
Download