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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
74
ChIP-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
99
DNA accessibility
74
DNA binding
60
Transcription
41
DNA methylation
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
134
zippedFastqFolder
100
bam
84
fastq
83
bed narrowPeak
67
bigWig
45
bigBed narrowPeak
7
txt
tsv
1
bed bed3+
Organism
274
Homo sapiens
Biosample type
140
tissue
134
primary cell
Organ
155
pancreas
80
epithelium
40
liver
23
adipose tissue
23
connective tissue
2
musculature of body
Project
140
AMP
134
HPAP
Genome assembly (visualization)
84
hg19
45
GRCh38
Lab
134
Klaus Kaestner, Upenn
76
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
1
inconsistent control read length
files.file_type!
tsv
BIOSAMPLE
ASSAY
274 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
tissue
liver
20
20
body of pancreas
33
islet of Langerhans
18
6
endocrine pancreas
16
subcutaneous adipose tissue
12
+ See 3 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
See all biosamples
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