Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
41
WGBS
35
single cell RNA-seq
32
ChIP-seq
26
total RNA-seq
22
snATAC-seq
Assay category
113
DNA accessibility
61
Transcription
41
DNA methylation
32
DNA binding
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
134
zippedFastqFolder
97
fastq
96
bam
92
bigWig
84
bed narrowPeak
tsv
14
bigBed narrowPeak
7
txt
1
bed bed3+
1
csv
Organism
247
Homo sapiens
Biosample type
181
primary cell
66
tissue
Organ
150
pancreas
115
epithelium
40
liver
2
musculature of body
Project
134
HPAP
113
AMP
Genome assembly (visualization)
85
hg19
46
GRCh38
Lab
134
Klaus Kaestner, Upenn
49
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
32
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
247 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
25
pancreatic beta cell
17
16
pancreatic ductal cell
4
13
pancreatic acinar cell
7
8
+ See 2 more…
tissue
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
See all biosamples
Download