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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
30
ATAC-seq
27
snATAC-seq
23
ChIP-seq
13
single cell RNA-seq
2
pCHi-C
Assay category
57
DNA accessibility
23
DNA binding
13
Transcription
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
5
transcription factor
2
narrow histone mark
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
587
bam
565
bigWig
tsv
89
txt
62
fastq
35
bed narrowPeak
22
tagAlign
6
bigBed narrowPeak
6
csv
4
bed bedgraph
4
bed broadPeak
2
bed bed3
2
bed bed3+
Organism
179
Homo sapiens
Biosample type
116
tissue
41
primary cell
18
cell line
4
in vitro differentiated cells
Organ
92
bone element
16
brain
14
artery
14
blood vessel
14
heart
14
vasculature
8
skeleton
7
connective tissue
6
limb
5
pancreas
3
liver
1
adipose tissue
1
spleen
Project
140
AMP
39
HPAP
Genome assembly (visualization)
42
hg19
37
GRCh38
Lab
139
AMP-T2D consortium
39
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
Audit category:
4
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
179 results
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Clear Filters
RNA microarray
ATAC-seq
snATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
distal epiphysis
1
+ See 11 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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