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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ATAC-seq
71
total RNA-seq
45
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
DNA binding
171
DNA accessibility
71
Transcription
47
DNA methylation
9
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
104
May, 2022
56
February, 2023
22
November, 2019
19
September, 2020
17
May, 2021
14
September, 2018
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
5
August, 2017
5
March, 2019
5
March, 2020
5
October, 2017
5
October, 2019
5
September, 2017
4
July, 2018
4
June, 2019
3
August, 2021
3
October, 2022
2
July, 2019
1
August, 2022
Available data
491
bam
462
bigWig
tsv
324
fastq
80
zippedFastqFolder
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
310
Homo sapiens
Biosample type
168
primary cell
113
tissue
30
cell line
Organ
311
pancreas
278
kidney
239
epithelium
101
bone element
91
heart
66
vasculature
65
liver
63
blood vessel
53
connective tissue
51
eye
49
artery
49
limb
48
musculature of body
42
brain
19
lung
18
ureter
17
adipose tissue
16
skeleton
9
blood
9
bodily fluid
5
vein
4
spleen
3
nerve
bone marrow
1
embryo
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
146
HPAP
137
AMP
28
T1D
Genome assembly (visualization)
87
hg19
72
GRCh38
Lab
146
Klaus Kaestner, Upenn
97
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
tsv
organ_slims!
bone marrow
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
311 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
35
42
25
1
pancreatic beta cell
23
11
16
1
pancreatic acinar cell
9
1
pancreatic ductal cell
4
tissue
islet of Langerhans
57
17
7
4
3
1
1
1
pancreas
1
2
4
1
2
1
1
body of pancreas
4
2
4
cell line
EndoC_BH1
18
6
1
2
1
Panc1
1
1
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