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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
833
ChIP-seq
253
ATAC-seq
176
DNase-seq
105
total RNA-seq
84
RNA microarray
70
single cell RNA-seq
28
snATAC-seq
21
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
833
DNA binding
461
DNA accessibility
175
Transcription
32
DNA methylation
16
3D chromatin structure
Target of assay
595
histone modification
594
histone
311
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
232
October, 2019
162
June, 2019
138
August, 2017
129
August, 2021
115
May, 2019
92
February, 2021
90
February, 2023
82
November, 2017
80
April, 2019
66
May, 2022
51
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
30
July, 2019
25
November, 2018
22
October, 2017
20
November, 2019
19
April, 2020
14
May, 2023
12
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
May, 2021
1
August, 2022
1
December, 2019
1
January, 2018
Available data
1409
bam
1291
bigWig
971
bed narrowPeak
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1602
Homo sapiens
Biosample type
1610
tissue
792
primary cell
543
cell line
171
in vitro differentiated cells
6
stem cell
Organ
287
kidney
242
brain
230
pancreas
206
liver
202
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1513
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
916
GRCh38
809
hg19
Lab
1259
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
csv
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1610 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
145
20
2
20
3
1
1
islet of Langerhans
70
67
1
31
7
3
1
4
1
4
bone element
84
heart left ventricle
35
2
3
4
1
1
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