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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
42
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
183
DNA binding
43
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
36
control
9
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
53
May, 2021
35
August, 2021
28
December, 2017
24
February, 2018
16
February, 2023
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
4
March, 2020
1
August, 2018
Available data
276
bam
245
bigWig
tsv
126
fastq
118
bed narrowPeak
40
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
248
Homo sapiens
Biosample type
1454
tissue
809
primary cell
248
in vitro differentiated cells
157
cell line
6
stem cell
Organ
92
connective tissue
23
embryo
22
epithelium
liver
3
pancreas
1
adipose tissue
Project
248
AMP
Genome assembly (visualization)
156
hg19
124
GRCh38
4
hg18
Lab
194
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
25
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
tsv
organ_slims!
liver
BIOSAMPLE
ASSAY
248 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
67
8
1
1
1
embryonic stem cell
40
6
5
neural progenitor cell
21
10
pancreatic endoderm
18
1
definitive endodermal cell
8
1
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