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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
188
ATAC-seq
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
279
DNA binding
276
DNA accessibility
87
Transcription
52
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
134
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
47
September, 2018
43
September, 2020
41
February, 2021
32
October, 2019
13
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
461
bigWig
459
bam
295
bed narrowPeak
289
fastq
153
zippedFastqFolder
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
721
Homo sapiens
Biosample type
1576
tissue
721
primary cell
543
cell line
254
in vitro differentiated cells
6
stem cell
Organ
237
epithelium
185
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
386
AMP
226
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
374
hg19
284
GRCh38
Lab
353
AMP-T2D consortium
226
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tsv
organ_slims!
lung
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
721 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
25
1
pancreatic beta cell
13
23
16
1
CD8-positive, alpha-beta T cell
33
2
1
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