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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
23
ATAC-seq
20
total RNA-seq
DNase-seq
5
WGBS
4
Hi-C
2
RRBS
2
STARR-seq
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
23
DNA accessibility
21
Transcription
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
53
August, 2017
50
May, 2020
50
November, 2018
40
May, 2022
26
August, 2021
6
October, 2019
3
February, 2021
3
July, 2019
1
December, 2018
1
March, 2020
Available data
676
bam
617
bigWig
462
fastq
436
bed narrowPeak
353
bigBed narrowPeak
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
611
Homo sapiens
Biosample type
386
cell line
203
tissue
15
in vitro differentiated cells
7
primary cell
Organ
611
liver
521
pancreas
349
epithelium
249
kidney
228
brain
197
connective tissue
195
heart
157
vasculature
153
blood vessel
101
bone element
88
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
54
musculature of body
52
eye
36
nerve
23
embryo
23
spleen
20
vein
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
611
AMP
Genome assembly (visualization)
458
hg19
364
GRCh38
Lab
549
AMP-T2D consortium
40
Karen Mohlke, UNC
22
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tsv
organ_slims!
lung
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
611 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
Hi-C
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
1
1
2
2
1
1
tissue
liver
145
20
20
3
1
1
1
right lobe of liver
10
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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