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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
5
DNase-seq
3
ATAC-seq
1
WGBS
Assay category
510
DNA binding
8
DNA accessibility
1
DNA methylation
Target of assay
326
transcription factor
101
control
82
recombinant protein
80
histone modification
79
histone
57
RNA binding protein
50
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
63
December, 2017
53
November, 2018
50
May, 2020
26
August, 2017
6
October, 2019
4
August, 2021
2
June, 2019
1
February, 2021
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
519
Homo sapiens
Biosample type
361
cell line
136
tissue
15
in vitro differentiated cells
7
primary cell
Organ
519
liver
283
pancreas
231
brain
171
epithelium
141
heart
132
kidney
127
vasculature
122
blood vessel
119
connective tissue
110
limb
60
blood
60
bodily fluid
51
musculature of body
48
artery
44
adipose tissue
38
nerve
24
spleen
22
embryo
20
vein
18
ureter
8
bone element
8
skeleton
7
eye
1
pituitary gland
Project
519
AMP
Genome assembly (visualization)
423
hg19
369
GRCh38
Lab
519
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tsv
organ_slims!
lung
BIOSAMPLE
ASSAY
519 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
cell line
HepG2
359
1
1
tissue
liver
122
2
right lobe of liver
10
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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