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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
34
DNase-seq
5
Hi-C
4
ATAC-seq
2
FAIRE-seq
2
RRBS
Assay category
235
DNA binding
40
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
202
histone
202
histone modification
123
narrow histone mark
79
broad histone mark
30
control
3
RNA binding protein
3
transcription factor
Date released
106
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
16
October, 2017
7
July, 2019
2
November, 2018
1
February, 2023
1
March, 2020
Available data
263
bam
237
bigWig
216
bed narrowPeak
140
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
282
Homo sapiens
Biosample type
242
tissue
40
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
282
AMP
Genome assembly (visualization)
217
GRCh38
169
hg19
Lab
282
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
files.file_type!
tsv
organ_slims!
lung
BIOSAMPLE
ASSAY
282 results
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ChIP-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 72 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 1 more…
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