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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
46
ATAC-seq
8
DNase-seq
4
Hi-C
2
WGBS
1
FAIRE-seq
Assay category
96
DNA binding
55
DNA accessibility
4
3D chromatin structure
2
DNA methylation
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
20
control
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
47
October, 2019
35
February, 2023
14
February, 2021
5
July, 2019
4
June, 2019
2
March, 2020
Available data
176
bam
145
bigWig
126
bed narrowPeak
76
bigBed narrowPeak
tsv
10
bed broadPeak
10
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
hic
2
bedpe bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tar
Organism
157
Homo sapiens
Biosample type
119
tissue
24
primary cell
14
cell line
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
157
AMP
Genome assembly (visualization)
126
GRCh38
96
hg19
Lab
157
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
tsv
organ_slims!
spleen
brain
BIOSAMPLE
ASSAY
157 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
FAIRE-seq
tissue
coronary artery
5
36
2
tibial artery
23
1
2
ascending aorta
16
1
thoracic aorta
16
1
aorta
13
1
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
6
8
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