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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1769
ChIP-seq
471
ATAC-seq
212
total RNA-seq
201
DNase-seq
158
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
67
WGBS
29
Hi-C
26
pCHi-C
20
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
Date released
111
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
7
August, 2021
2
February, 2023
1
August, 2022
Available data
85
txt
27
fastq
21
zippedFastqFolder
tsv
1
bed bed3+
Organism
167
Homo sapiens
Biosample type
113
tissue
56
primary cell
Organ
84
bone element
11
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
1
adipose tissue
1
connective tissue
1
musculature of body
Project
93
AMP
48
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
1
hg19
Lab
87
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
84
inconsistent ontology term
29
audit script error
files.file_type!
tsv
organ_slims!
vasculature
BIOSAMPLE
ASSAY
169 results
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RNA microarray
snATAC-seq
tissue
bone element
84
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
+ See 2 more…
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
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