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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
14
ATAC-seq
13
single cell RNA-seq
2
ChIP-seq
2
pCHi-C
Assay category
41
DNA accessibility
13
Transcription
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
400
November, 2017
322
August, 2017
251
October, 2019
226
May, 2021
211
June, 2019
200
May, 2022
196
August, 2021
154
February, 2023
152
May, 2020
142
February, 2021
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
70
May, 2019
59
September, 2020
47
September, 2018
47
September, 2023
41
November, 2019
36
July, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
17
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
506
bam
495
bigWig
89
txt
45
fastq
11
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
tagAlign
Organism
142
Homo sapiens
Biosample type
93
tissue
41
primary cell
4
cell line
4
in vitro differentiated cells
Organ
92
bone element
14
artery
14
blood vessel
14
heart
vasculature
8
skeleton
6
connective tissue
6
limb
3
liver
Project
103
AMP
39
HPAP
Genome assembly (visualization)
17
hg19
11
GRCh38
Lab
103
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
files.file_type!
tsv
organ_slims!
vasculature
BIOSAMPLE
ASSAY
142 results
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RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
tissue
bone element
84
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 5 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
cell line
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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