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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
DNase-seq
84
RNA microarray
33
ChIP-seq
27
snATAC-seq
14
ATAC-seq
13
single cell RNA-seq
2
pCHi-C
Assay category
221
DNA accessibility
33
DNA binding
13
Transcription
Target of assay
19
histone
19
histone modification
11
narrow histone mark
9
control
8
broad histone mark
5
transcription factor
4
RNA binding protein
Date released
400
November, 2017
322
August, 2017
251
October, 2019
226
May, 2021
211
June, 2019
200
May, 2022
196
August, 2021
154
February, 2023
152
May, 2020
142
February, 2021
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
70
May, 2019
59
September, 2020
47
September, 2018
47
September, 2023
41
November, 2019
36
July, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
17
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
717
bam
698
bigWig
tsv
214
bed narrowPeak
203
bigBed narrowPeak
182
bed bed3+
180
bed broadPeak
180
bigBed broadPeak
89
txt
45
fastq
6
csv
4
bed bedgraph
2
bed bed3
2
tagAlign
Organism
353
Homo sapiens
Biosample type
253
tissue
92
primary cell
4
cell line
4
in vitro differentiated cells
Organ
92
bone element
81
kidney
49
heart
43
musculature of body
38
limb
30
brain
24
connective tissue
vasculature
20
epithelium
19
blood vessel
18
ureter
16
artery
8
skeleton
7
eye
5
liver
4
pancreas
1
adipose tissue
Project
314
AMP
39
HPAP
Genome assembly (visualization)
214
GRCh38
198
hg19
Lab
314
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
109
inconsistent ontology term
27
audit script error
1
inconsistent replicate
files.file_type!
tsv
organ_slims!
vasculature
BIOSAMPLE
ASSAY
353 results
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Clear Filters
DNase-seq
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
primary cell
Langerhans cell
27
12
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
+ See 15 more…
cell line
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
See all biosamples
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