Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
14
ATAC-seq
13
single cell RNA-seq
2
pCHi-C
1
ChIP-seq
Assay category
41
DNA accessibility
13
Transcription
1
DNA binding
Target of assay
control
1
transcription factor
Date released
331
November, 2017
272
August, 2017
219
October, 2019
217
May, 2021
203
June, 2019
200
May, 2022
184
August, 2021
154
February, 2023
141
February, 2021
129
May, 2020
82
November, 2018
73
December, 2017
66
April, 2019
59
September, 2020
58
May, 2019
47
September, 2018
47
September, 2023
45
October, 2018
40
May, 2024
39
November, 2019
36
July, 2019
31
December, 2018
21
January, 2019
20
October, 2017
19
April, 2020
17
March, 2020
16
February, 2018
16
January, 2021
15
May, 2023
8
January, 2018
7
August, 2020
7
November, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
505
bam
495
bigWig
89
txt
45
fastq
11
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
1
tagAlign
Organism
141
Homo sapiens
Biosample type
93
tissue
41
primary cell
4
in vitro differentiated cells
3
cell line
Organ
92
bone element
12
artery
12
blood vessel
12
heart
vasculature
8
skeleton
6
connective tissue
6
limb
3
liver
Project
102
AMP
39
HPAP
Genome assembly (visualization)
17
hg19
11
GRCh38
Lab
102
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
files.file_type!
tsv
organ_slims!
vasculature
target.investigated_as!
control
BIOSAMPLE
ASSAY
141 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
pCHi-C
ChIP-seq
tissue
bone element
84
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 5 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
in vitro differentiated cells
adipocyte
4
cell line
HepG2
1
1
iPSC derived cell line
1
See all biosamples
Download