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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
6
ATAC-seq
6
WGBS
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
72
DNA binding
6
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
17
transcription factor
11
narrow histone mark
5
RNA binding protein
Date released
56
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
86
Homo sapiens
Biosample type
86
tissue
1
in vitro differentiated cells
Organ
554
liver
508
pancreas
346
epithelium
252
kidney
213
brain
196
connective tissue
155
heart
151
vasculature
149
blood vessel
101
bone element
87
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
52
eye
41
musculature of body
36
nerve
23
embryo
23
spleen
19
lung
18
vein
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
87
AMP
Genome assembly (visualization)
25
hg19
24
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tsv
bed broadPeak
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
ATAC-seq
WGBS
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
12
1
1
omental fat pad
11
1
white adipose tissue
12
adipose tissue
2
3
3
1
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in vitro differentiated cells
white fat cell
1
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