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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
46
ATAC-seq
3
Hi-C
2
WGBS
1
FAIRE-seq
Assay category
99
DNA binding
47
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
43
October, 2019
35
February, 2023
14
February, 2021
4
July, 2019
3
November, 2017
2
March, 2020
Available data
180
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
tsv
13
bed broadPeak
13
bigBed broadPeak
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
151
Homo sapiens
Biosample type
114
tissue
23
primary cell
14
cell line
Organ
604
liver
500
pancreas
347
epithelium
252
kidney
225
brain
179
connective tissue
155
heart
155
vasculature
151
blood vessel
101
bone element
84
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
53
musculature of body
52
eye
36
nerve
23
spleen
20
embryo
20
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
151
AMP
Genome assembly (visualization)
120
GRCh38
91
hg19
Lab
151
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
tsv
bed bed3+
BIOSAMPLE
ASSAY
151 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
WGBS
FAIRE-seq
tissue
coronary artery
5
36
tibial artery
23
1
thoracic aorta
16
1
aorta
13
1
2
ascending aorta
16
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
cell line
smooth muscle cell of the coronary artery
6
8
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