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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
46
ATAC-seq
5
Hi-C
2
WGBS
1
FAIRE-seq
Assay category
95
DNA binding
47
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
67
histone
67
histone modification
43
broad histone mark
24
narrow histone mark
21
control
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
41
October, 2019
35
February, 2023
14
February, 2021
6
July, 2019
2
March, 2020
1
November, 2017
Available data
180
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
tsv
13
bed broadPeak
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
149
Homo sapiens
Biosample type
114
tissue
21
primary cell
14
cell line
Organ
554
liver
522
pancreas
346
epithelium
252
kidney
222
brain
197
connective tissue
155
heart
151
vasculature
149
blood vessel
101
bone element
88
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
54
musculature of body
52
eye
36
nerve
23
embryo
23
spleen
19
lung
18
vein
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
149
AMP
Genome assembly (visualization)
118
GRCh38
89
hg19
Lab
149
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
tsv
bigBed broadPeak
BIOSAMPLE
ASSAY
149 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
WGBS
FAIRE-seq
tissue
coronary artery
5
36
tibial artery
23
1
thoracic aorta
16
1
aorta
13
1
2
ascending aorta
16
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
6
8
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