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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
46
ATAC-seq
7
DNase-seq
3
Hi-C
2
WGBS
Assay category
82
DNA binding
53
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
55
histone
55
histone modification
36
broad histone mark
19
control
19
narrow histone mark
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
35
February, 2023
26
October, 2019
14
February, 2021
6
July, 2019
5
June, 2019
3
November, 2017
1
March, 2020
Available data
160
bam
135
bigWig
116
bed narrowPeak
tsv
66
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
tagAlign
3
fastq
2
hdf5
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
140
Homo sapiens
Biosample type
119
tissue
14
cell line
7
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
140
AMP
Genome assembly (visualization)
117
GRCh38
84
hg19
Lab
140
AMP-T2D consortium
files.file_type!
tsv
organ_slims!
vein
BIOSAMPLE
ASSAY
140 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
tissue
coronary artery
5
36
2
tibial artery
23
1
2
ascending aorta
16
1
thoracic aorta
16
1
aorta
13
1
2
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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